research

Scientific publications

iSDA staff have published a number of relevant articles in scientific journals. Selected articles form the past 10 years can be viewed here.

Virtual Agronomist - an AI-assisted chatbot for guiding crop management decisions of smallholder farmers in Africa.
Shepherd KD, Miller MAE, Kisitu B, Miles BG, Gbedevi K, Chunga PZ, Wairimu Thuo AG, Musiiwa RF, Gyampo ED, Cross M, Dobermann A and Collinson J
2025

Accounting for analytical and proximal soil sensing errors in digital soil mapping. European Journal of Soil Science 73: e13226.
Takoutsing, B., Heuvelink, G.B.M., Stoorvogel, J.J., Shepherd, K.D. & Aynekulu, E.
2022

A global soil spectral calibration library and estimation service. Soil Security 7: 100061.
Shepherd, K.D., Ferguson, R., Hoover, D., van Egmond, F., Sanderman, J., & Ge, Y.
2022

Continental-scale controls on soil organic carbon across sub-Saharan Africa. SOIL, 7, 305–332.
von Fromm,S.F., Hoyt, A.M., Acquah, G.E., Aynekulu, E., Berhe, A.A., Haefele, S.M., Lange, M., McGrath, S.P., Shepherd, K.D., Sila, A.M., Six, J., Towett, E.K., Trumbore, S.E.,Vågen, T-G., Weullow, E., Winowiecki, L.A., Doetter, S
2021

African Soil Properties and Nutrients Mapped at 30--m Spatial Resolution usingTwo-scale Ensemble Machine Learning. Sci Rep 11, 6130 (2021).
Hengl, T., Miller, M., Krizan, J., Shepherd, K., Sila, A., Kilibarda, M., ... & Crouch, J
2021

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Johnson, J-M, Sila, A., Senthilkumar, K., Shepherd, K.D., Saito, K. 2021. Application of infrared spectroscopy for estimation of concentrations of macro- and micronutrients in rice in sub-Saharan Africa. Field Crops Research 270
2021

No changes in soil organic carbon and nitrogen following long-term prescribed burning and livestock exclusion in the Sudan- savanna woodlands of Burkina Faso. Basic & Applied Ecology56: 165-175.
Betemariam, E. Sileshi, G.W., Rosenstock, T.S., van Noordwijk, M., Tsegaye D., Koala, J., Sawadogo, L., Milne, E., de Leeuw J., and Shepherd K
2021

Continental-scale controls on soil organic carbon across sub-Saharan Africa. SOIL, 7,305–332.
von Fromm, S.F., Hoyt, A.M., Acquah, G.E., Aynekulu, E., Berhe, A.A., Haefele, S.M., Lange, M., McGrath, S.P., Shepherd, K.D., Sila, A.M., Six, J., Towett, E.K., Trumbore, S.E.,Vågen, T-G., Weullow, E., Winowiecki, L.A., Doetter, S
2021

Genetic diversity and population structure of cowpea Vigna unguiculata (L.) Walp. germplasm collected from Togo based on DArT markers. Genes 12 (1451): 1– 14.
Gbedevi, K. M., Boukar, O., Ishikawa, H., Abe, A., Ongom, P. O., Unachukwu, N., Rabbi, I. and Fatokun, C
2021

Soil and farm management effects on yield and nutrient concentrations of food crops in East Africa. Science of the Total Environment 716: 137078.
Fischer, S., Hilger, T., Piepho, H-P., Jordan, I., Karungi, J. Towett, E., Shepherd, K., Cadisch, G
2020

A Knowledge Brokering Framework for Integrated Landscape Management. Frontiers in Sustainable Food Systems 4:13.
McGonigle DF, Nodari GR, Phillips R, Aynekulu E, Estrada Carmona N, Jones S, Koziell I, Luedeling E, Remans R, Shepherd K, Wiberg D, Whitney C and Zhang W
2020

Rice Yield Gaps in Smallholder Systems of the Kilombero Floodplain in Tanzania. Agronomy 10(8): 1135.
Kwesiga, J., Grotelüschen, K., Senthilkumar, K., Neuhoff, D., Döring, T.F., Becker, M
2020

Effect of organic amendments on the productivity of rainfed lowland rice in the Kilombero floodplain of Tanzania. Agronomy 10(9): 1280.
Kwesiga, J., Grotelüschen, K., Senthilkumar, K., Neuhoff, D., Döring, T.F., Becker, M
2020

Genetic diversity and population structure analyses of wild relatives and cultivated cowpea (Vigna unguiculata (L.) Walp.) from Senegal using simple sequence repeat markers. Plant Molecular Biology Reporter 39: 112–124.
Sarr, A., Bodian, A., Gbedevi, K. M., Ndir, K. N., Ajewole, O. O., Gueye, B., Foncéka, D., Diop, E. A. M. C., Diop, B. M., Cissé, N. and Diouf, D
2020

Pre-treatment of soil X-ray powder diffraction data for cluster analysis. Geoderma 337: 413-424.
Butler BM, Sila AM, Shepherd KD, Nyambura M, Gilmore CJ, Kourkoumelis N, Hillier S
2019

Readily available concentrations of selected micronutrients and harmful metals in soils of Sub-Saharan Africa. Geoderma 347: 203 – 209.
Keskinena, R., Nyambura, M.,1 Heikkinen, J., Sila, A., Eurola, M., Towett, E., Shepherd, K., Esala, M
2019

A Planetary Health Perspective on Agroforestry in Sub-Saharan Africa. One Earth 1: 330-344.
Rosenstock, T.S., Dawson, I., Aynekulu, E., Chomba, S., Degrande, A., Fornace, K., Jamnadas, R., Kimaro, A., Kindt, R., Lamanna, C., Malesu, M., Mausch, K., McMullin, S., Murage, P., Namoi, N., Njenga, M., Nyoka, I., Valencia, A.M.P., Sola, P., Shepherd, K., and Steward, P
2019

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Forest restoration: Overlooked constraints. Science 366 (6463): 315. DOI: 10.1126/science.aay7988
Luedeling, E., Börner, J., Amelung, W., Schiffers, K., Shepherd, K, and Rosenstock, T
2019

Pre-treatment of soil X-ray powder diffraction data for cluster analysis. Geoderma 337: 413–424.
Butler, B.M., Sila, A.M., Shepherd, K.D., Nyambura, M., Gilmore, C.J., Kourkoumelis, N., Hillier, S
2019

A decision analysis framework for development planning and performance measurement: application to land restoration investments. Land Degradation & Development (accepted subject to revision)
Shepherd KD, Whitney C, Luedeling E
2019

Probabilistic Decision Tools for Determining Impacts of Agricultural Development Policy on Household Nutrition, Earth's Future, 6, 359–372.
Whitney, C. W., Lanzanova, D., Muchiri, C., Shepherd, K. D., Rosenstock, T. S., Krawinkel, M., Tabuti, J. R. S., & Luedeling, E
2018

When less is more: innovations for tracking progress toward global targets. Current Opinion in Environmental Sustainability 26–27: 54-61.
Rosenstock TS, Lamanna C, Chesterman S, Hammond J, Kadiyala S, Luedeling E, Shepherd K, DeRenzi B, van Wijk MT.
2017

Additional links:

Soil nutrient maps of Sub-Saharan Africa: assessment of soil nutrient content at 250 m spatial resolution using machine learning. Nutrient Cycling in Agroecosystems 109:77–102. DOI 10.1007/s10705-017-9870-x
Hengl T, Leenaars JGB, Shepherd KD, Walsh MG, Heuvelink GBM, Mamo T, Tilahun H, Berkhout E, Cooper M, Fegraus E, Wheeler I, Kwabena NA.
2017

A global spectral library to characterize the world's soil. Earth-Science Reviews 155: 198-230.
Viscarra Rossel, R.A., Behrens, T., Ben-Dor, E., Brown, D.J., Demattê J.A.M., Shepherd, K.D., Shi, Z., Stenberg, B., Stevens, A., Adamchuk, V., Aïchi, H., Barthès, B.G., Bartholomeus, H.M., Bayer, A.D., Bernoux, M., Böttcher, K., Brodský, L., Du, C.W., Chappell, A., Fouad, Y., Genot, V., Gomez, C., Grunwald, S., Gubler, A., Guerrero, C., Hedley, M. Knadel, H.J.M. Morrás, M. Nocita, L. Ramirez-Lopez, P. Roudier, E.M. Rufasto Campos, C.B., Sanborn, P., Sellitto, V.M., Sudduth, K.A., Rawlins, B.G,. Walter, C., Winowiecki, L.A., Hong, S.Y., Ji, W.
2016

Additional links:

The Land-Potential Knowledge System (LandPKS): mobile apps and collaboration for optimizing climate change investments. Ecosystem Health and Sustainability 2(3):e01209.
Herrick J. E., Beh, A., Barrios, E., Bouvier, I., Coetzee, M., Dent, D., Elias, E., Hengl, T., Karl, J.W., Liniger, H., Matuszak, J., Ne, J.C., Ndungu, L.W., Obersteiner, M., Shepherd, K.D., Urama, K.C., van den Bosch, R. and Webb, N.P.
2016

Assessment of soil health indicators for sustainable production of maize in smallholder farming systems in the highlands of Cameroon, Geoderma 276: 64-73. .
Takoutsing, B., Weber, J., Aynekulu, E., Rodríguez Martín, J.A., Shepherd, K., Sila, A., Tchoundjeu, Z., and Diby, L.
2016

Additional links:

Is conservation agriculture 'climate-smart' for maize farmers in the highlands of Tanzania? Nutrient Cycling in Agroecosystems 105: 217–228.
Kimaro AA, Mpanda M, Rioux J, Aynekulu E, Shaba S, Thiong'o M, Mutuo P, Abwanda S, Shepherd K, Neufeldt H, Rosenstock TS
2016

Environmental implications of high metal content in soils of a titanium mining zone in Kenya. Environ Sci Pollut Res 23:21431–21440. DOI 10.1007/s11356-016-7249-1
Maina DM, Ndirangu DM, Mangala MM, Boman J, Shepherd K, Gatari MJ
2016

Landscape-scale movement of terrestrial pyrogenic carbon following land-use change in headwaters of the White Nile watershed of East Africa. Global Biogeochemical Cycles 29,1911–1928
Guerena, D, Todd Walter, M., Enders, A., Neufeldt, H., Odiwour, H., Biwott, H., Recha, J., Shepherd, K., Barrios, E., Wurster, C
2015

Development goals should enable decision-making. Nature 523, 152-154(). DOI: 10.1038/523152a().
Shepherd K, Hubbard D, Fenton N, Claxton K, Luedeling E, De Leeuw J,
2015

Soil Spectroscopy: An Alternative to Wet Chemistry for Soil Monitoring. Advances in Agronomy 132: 139 – 159.
Nocita, M., Stevens, A. van Wesemael, B., Aitkenhead, M., Bachmann, M., Barthes, B., Ben Dor, E., Brown, D.J., Clairotte, M., Csorba, A., Dardenne, P., Demattê, J.A.M., Genot, V., Guerrero, C., Knadel, M., Montanarella, L., Noon, C., Ramirez-Lopez, L., Robertson, J., Sakai, H., Soriano-Disla, J.M., Shepherd, K.D., Stenberg, B., Towett, E.K, Vargas, R., Wetterlind, J.
2015

Targeting conservation agriculture in the context of livelihoods and landscapes. Agriculture, Ecosystems and Environment 187: 47–51
Rosenstock,T.S., Mpanda, M., Rioux J., Aynekulua, E., Kimaro, A.A., Neufeldt, H., Shepherd. K.D., Luedeling. E.
2014

Soil spectroscopy: an opportunity to be seized. Global Change Biology. Article first published online. 21 Jun 2014, DOI: 10.1111/gcb.12632
Nocita M, Stevens A, van Wesemael B, Brown DJ, Shepherd KD, Towett, E, Vargas R, Montanarella L.
2014

Limitations to use of infrared spectroscopy for rapid determination of carbon-nitrogen and wood density for tropical species. Advances in Analytical Chemistry 3: 21–28. DOI: 10.5923/j.aac.20130303.01
Olale, K., Yenesew, A., Jamnadass, R., Sila, A., Aynekulu, E., Kuyah, S., Shepherd, K.
2013

Do ecosystem services influence household wealth in rural Mali? Ecological Economics 82: 33–44.
King Liebenow D., Cohen M.J., Gumbricht, T., Shepherd, K.D., Shepherd, G.
2012

Diagnosis of Soil Nutrient Constraints in Small-scale Groundnut (Arachis hyopaea L.) Production Systems of Western Kenya Using Infrared Spectroscopy. Journal of Agricultural Science and Technology A1: 111–127
Muhati SI, Shepherd KD, Gachene CK, Mburu MW, Jones R, Kironchi GO and Sila A
2011

Generic prediction of soil organic carbon in Alfisols using diffuse reflectance Fourier transformed mid-infrared spectroscopy. Soil Science Society of America Journal 75: 2358–2360
Kamau-Rewe, M., Rasche, F., Cobo, J.G., Dercon, G., Shepherd, K.D., Cadisch, G.
2011

Spectral remote sensing of evaporate minerals and associated sediments in Lake Magadi area, Kenya. International Journal of Applied Earth Observation and Geoinformation 14: 22–32
Kodikara G., Woldai T., van Ruitenbeek, F., Kuriac, Z., van der Meer, F., Shepherd, K., van Hummel, J.
2011

Integrated soil fertility management: Operational definition and consequences for implementation and dissemination. Outlook on Agriculture 39(1): 17–24
Vanlauwe B, BationoA, ChianuJ, Giller KE, Merckx R, MokwunyeU, Ohiokpehai O, Pypers P, Tabo R, Shepherd K, Smaling E, Woomer PL, and Sanginga N.
2010

Effects of improved fallow with Sesbania sesban on maize productivity and Striga hermonthica infestation in Western Kenya. Journal of Forestry Research 21(3): 379−386. DOI 10.1007/s11676-010-0085-0
Sjögren H, Shepherd, KD and Karlsson, A.
2010

Digital soil map of the world. Science 325: 680-681. DOI: 10.1126/science.1175084
Sanchez P.A., Ahamed S., Carré F., Hartemink A.E., Hempel J., Huising J., Lagacherie P., McBratney A.B., McKenzie N.J., Mendonça-Santos L., Minasny B., Montanarella L., Okoth P., Palm C.A., Sachs J.D., Shepherd K.D., Vågen T-G., Vanlauwe B., Walsh M.G., Winowiecki L.A., Zhang G-L.
2009

Unravelling the effects of soil and crop management on maize productivity in smallholder agricultural systems of western Kenya--An application of classification and regression tree analysis. Agriculture, Ecosystems & Environment, 123, Issues (1-3): 137-150. DOI: 10.1016/j.agee.2007.05.005
Tittonell P, Shepherd KD, Vanlauwe B, Giller KE.
2008

Bio-economic evaluation of farmers' perceptions of viable farms in Western Kenya. Agricultural Systems 90: 243–271
Waithaka MM. Thornton PK, Herrero M, Shepherd KD, Ndiwa, NN
2006

Decomposition and mineralization of organic residues predicted using near infrared spectroscopy. Plant and Soil 277:315-333
Shepherd, KD, Vanlauwe B, Gachengo CN Palm CA
2005

Validation of a resource quality-based conceptual framework for organic matter management. Soil Science Society of America Journal 69:1135–1145
Vanlauwe B, Gachengo C, Shepherd KD, Barrios E, Cadisch G, Palm CA
2005

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